%matplotlib inline
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sb
from scipy.io import loadmat
from sklearn import svm

mat = loadmat('./data/ex6data1.mat')
print(mat.keys())
# dict_keys(['__header__', '__version__', '__globals__', 'X', 'y'])
X = mat['X']
y = mat['y']

def plotData(X, y):
    plt.figure(figsize=(8,5))
    plt.scatter(X[:,0], X[:,1], c=y.flatten(), cmap='rainbow')
    plt.xlabel('X1')
    plt.ylabel('X2')
    plt.legend() 
plotData(X, y)

def plotBoundary(clf, X):
    '''plot decision bondary'''
    x_min, x_max = X[:,0].min()*1.2, X[:,0].max()*1.1
    y_min, y_max = X[:,1].min()*1.1,X[:,1].max()*1.1
    xx, yy = np.meshgrid(np.linspace(x_min, x_max, 500),
                         np.linspace(y_min, y_max, 500))
    Z = clf.predict(np.c_[xx.ravel(), yy.ravel()])
    Z = Z.reshape(xx.shape)
    plt.contour(xx, yy, Z)

models = [svm.SVC(C, kernel='linear') for C in [1, 100]]
clfs = [model.fit(X, y.ravel()) for model in models]

title = ['SVM Decision Boundary with C = {} (Example Dataset 1'.format(C) for C in [1, 100]]
for model,title in zip(clfs,title):
    plt.figure(figsize=(8,5))
    plotData(X, y)
    plotBoundary(model, X)
    plt.title(title)

def gaussKernel(x1, x2, sigma):
    return np.exp(- ((x1 - x2) ** 2).sum() / (2 * sigma ** 2))
gaussKernel(np.array([1, 2, 1]),np.array([0, 4, -1]), 2.)  # 0.32465246735834974

mat = loadmat('./data/ex6data2.mat')
X2 = mat['X']
y2 = mat['y']

plotData(X2, y2)

sigma = 0.1
gamma = np.power(sigma,-2.)/2
clf = svm.SVC(C=1, kernel='rbf', gamma=gamma)
modle = clf.fit(X2, y2.flatten())
plotData(X2, y2)
plotBoundary(modle, X2)

mat3 = loadmat('data/ex6data3.mat')
X3, y3 = mat3['X'], mat3['y']
Xval, yval = mat3['Xval'], mat3['yval']
plotData(X3, y3)

Cvalues = (0.01, 0.03, 0.1, 0.3, 1., 3., 10., 30.)
sigmavalues = Cvalues
best_pair, best_score = (0, 0), 0
for C in Cvalues:
    for sigma in sigmavalues:
        gamma = np.power(sigma,-2.)/2
        model = svm.SVC(C=C,kernel='rbf',gamma=gamma)
        model.fit(X3, y3.flatten())
        this_score = model.score(Xval, yval)
        if this_score > best_score:
            best_score = this_score
            best_pair = (C, sigma)
print('best_pair={}, best_score={}'.format(best_pair, best_score))
# best_pair=(1.0, 0.1), best_score=0.965

model = svm.SVC(C=1., kernel='rbf', gamma = np.power(.1, -2.)/2)
model.fit(X3, y3.flatten())
plotData(X3, y3)
plotBoundary(model, X3)

# 這我的一個(gè)練習(xí)畫圖的，和作業(yè)無(wú)關(guān)，給個(gè)畫圖的參考。
import numpy as np
import matplotlib.pyplot as plt
from sklearn import svm
# we create 40 separable points
np.random.seed(0)
X = np.array([[3,3],[4,3],[1,1]])
Y = np.array([1,1,-1])
# fit the model
clf = svm.SVC(kernel='linear')
clf.fit(X, Y)
# get the separating hyperplane
w = clf.coef_[0]
a = -w[0] / w[1]
xx = np.linspace(-5, 5)
yy = a * xx - (clf.intercept_[0]) / w[1]
# plot the parallels to the separating hyperplane that pass through the
# support vectors
b = clf.support_vectors_[0]
yy_down = a * xx + (b[1] - a * b[0])
b = clf.support_vectors_[-1]
yy_up = a * xx + (b[1] - a * b[0])
# plot the line, the points, and the nearest vectors to the plane
plt.figure(figsize=(8,5))
plt.plot(xx, yy, 'k-')
plt.plot(xx, yy_down, 'k--')
plt.plot(xx, yy_up, 'k--')
# 圈出支持向量
plt.scatter(clf.support_vectors_[:, 0], clf.support_vectors_[:, 1],
            s=150, facecolors='none', edgecolors='k', linewidths=1.5)
plt.scatter(X[:, 0], X[:, 1], c=Y, cmap=plt.cm.rainbow)
plt.axis('tight')
plt.show()
print(clf.decision_function(X))

[ 1. 1.5 -1. ]

with open('data/emailSample1.txt', 'r') as f:
    email = f.read()
    print(email)

> Anyone knows how much it costs to host a web portal ?
>
Well, it depends on how many visitors you're expecting.
This can be anywhere from less than 10 bucks a month to a couple of $100. 
You should checkout http://www.rackspace.com/ or perhaps Amazon EC2 
if youre running something big..
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  1. Lower-casing: 把整封郵件轉(zhuǎn)化為小寫。
  2. Stripping HTML: 移除所有HTML標(biāo)簽，只保留內(nèi)容。
  3. Normalizing URLs: 將所有的URL替換為字符串 “httpaddr”.
  4. Normalizing Email Addresses: 所有的地址替換為 “emailaddr”
  5. Normalizing Dollars: 所有dollar符號(hào)($)替換為“dollar”.
  6. Normalizing Numbers: 所有數(shù)字替換為“number”
  7. Word Stemming(詞干提取): 將所有單詞還原為詞源。例如，“discount”, “discounts”, “discounted” and “discounting”都替換為“discount”。
  8. Removal of non-words: 移除所有非文字類型，所有的空格(tabs, newlines, spaces)調(diào)整為一個(gè)空格.

%matplotlib inline
import numpy as np
import matplotlib.pyplot as plt
from scipy.io import loadmat
from sklearn import svm
import re #regular expression for e-mail processing
# 這是一個(gè)可用的英文分詞算法(Porter stemmer)
from stemming.porter2 import stem
# 這個(gè)英文算法似乎更符合作業(yè)里面所用的代碼，與上面效果差不多
import nltk, nltk.stem.porter

def processEmail(email):
    """做除了Word Stemming和Removal of non-words的所有處理"""
    email = email.lower()
    email = re.sub('<[^<>]>', ' ', email)  # 匹配<開頭，然后所有不是< ,> 的內(nèi)容，知道>結(jié)尾，相當(dāng)于匹配<...>
    email = re.sub('(http|https)://[^\s]*', 'httpaddr', email )  # 匹配//后面不是空白字符的內(nèi)容，遇到空白字符則停止
    email = re.sub('[^\s]+@[^\s]+', 'emailaddr', email)
    email = re.sub('[\$]+', 'dollar', email)
    email = re.sub('[\d]+', 'number', email) 
    return email

def email2TokenList(email):
    """預(yù)處理數(shù)據(jù)，返回一個(gè)干凈的單詞列表"""
    # I'll use the NLTK stemmer because it more accurately duplicates the
    # performance of the OCTAVE implementation in the assignment
    stemmer = nltk.stem.porter.PorterStemmer()
    email = preProcess(email)
    # 將郵件分割為單個(gè)單詞，re.split() 可以設(shè)置多種分隔符
    tokens = re.split('[ \@\$\/\#\.\-\:\&\*\+\=\[\]\?\!\(\)\{\}\,\'\"\>\_\<\;\%]', email)
    # 遍歷每個(gè)分割出來(lái)的內(nèi)容
    tokenlist = []
    for token in tokens:
        # 刪除任何非字母數(shù)字的字符
        token = re.sub('[^a-zA-Z0-9]', '', token);
        # Use the Porter stemmer to 提取詞根
        stemmed = stemmer.stem(token)
        # 去除空字符串‘'，里面不含任何字符
        if not len(token): continue
        tokenlist.append(stemmed)
    return tokenlist  

def email2VocabIndices(email, vocab):
    """提取存在單詞的索引"""
    token = email2TokenList(email)
    index = [i for i in range(len(vocab)) if vocab[i] in token ]
    return index

def email2FeatureVector(email):
    """
    將email轉(zhuǎn)化為詞向量，n是vocab的長(zhǎng)度。存在單詞的相應(yīng)位置的值置為1，其余為0
    """
    df = pd.read_table('data/vocab.txt',names=['words'])
    vocab = df.as_matrix()  # return array
    vector = np.zeros(len(vocab))  # init vector
    vocab_indices = email2VocabIndices(email, vocab)  # 返回含有單詞的索引
    # 將有單詞的索引置為1
    for i in vocab_indices:
        vector[i] = 1
    return vector

vector = email2FeatureVector(email)
print('length of vector = {}\nnum of non-zero = {}'.format(len(vector), int(vector.sum())))

length of vector = 1899
num of non-zero = 45

# Training set
mat1 = loadmat('data/spamTrain.mat')
X, y = mat1['X'], mat1['y']
# Test set
mat2 = scipy.io.loadmat('data/spamTest.mat')
Xtest, ytest = mat2['Xtest'], mat2['ytest']

clf = svm.SVC(C=0.1, kernel='linear')
clf.fit(X, y)

predTrain = clf.score(X, y)
predTest = clf.score(Xtest, ytest)
predTrain, predTest

(0.99825, 0.989)